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Preheat the oven to 400°F
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Place the whole butternut squash on a parchment-lined baking sheet.
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Bake for 25 minutes until it starts to soften.
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Remove from oven and let cool.
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Cut the eggplant into round slices.
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Brush both sides with olive oil and season with salt and pepper.
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Transfer to a parchment-lined baking sheet.
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Bake for 15 minutes. Flip the slices and bake for another 15 minutes.
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Remove from oven and let cool.
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When the squash is cool enough to handle, peel, de-seed, and cut into round slices.
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Lay them on the baking sheet. Brush with oil and season with salt and pepper.
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Bake for 10-15 minutes until tender but not mushy. They should still hold their shape.
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Remove from oven and let cool.
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Puree the tomatoes in a food processor.
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Peel and mince the garlic cloves.
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Heat 2 tablespoons of olive oil in a pot.
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Add the garlic and stir until it becomes fragrant.
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Add the tomatoes and paste and bring to a boil.
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Season with salt, pepper, sugar, oregano, and chili flakes.
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Reduce the heat to low and simmer for 20 minutes.
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Stir in the honey. cook for another 10 minutes. Remove from the heat.
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Beat the eggs with a fork.
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Arrange the eggs, panko, and flour on separate flat dishes.
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Heat 3 tablespoons of olive oil in a large skillet.
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Coat the eggplant and squash slices in flour.
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Then dip them in egg and dredge them in panko.
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Cook in the oil until crispy.
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Spread sauce on the bottom of a large casserole dish.
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Layer the eggplant and squash slices on top to cover the sauce.
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Cover with slices of mozzarella.
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Repeat, then top with the rest of the sauce and distribute the parmesan cheese.
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Bake for 30 minutes at 400°F.
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Garnish with basil and serve in the pan.