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Preheat the oven to 350°F.
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Heat two tablespoons of the clarified butter in a skillet over medium heat.
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Place the duck breasts in the pan, skin-side down.
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Brown the skin side. Then turn them over and brown evenly on the other side.
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Pour off the excess duck fat. Discard or set aside for future use.
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Season the duck with salt and freshly ground pepper on both sides.
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Transfer to an oven-proof casserole dish.
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Bake for 30 minutes.
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Bring a pot of water to a boil over high heat.
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Place a bowl of ice water to the side.
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Blanch the pearl onions for 2 minutes.
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Immediately transfer the onions to the ice water for 5 minutes.
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Drain and cut the stem off of each, then slip off the outer skin.
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Add the remaining two tablespoons of clarified butter to the pan with the remaining duck drippings over medium heat.
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Add the onions, stirring constantly until they turn golden.
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Stir in the white wine, apple cider vinegar, chicken stock, and sugar.
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When the brown sugar has dissolved, mix in the honey and garlic.
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Lower the heat to a simmer and cook for another 5 minutes, stirring and scraping the bits off the bottom frequently.
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Remove the pan from the heat. Set aside.
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Transfer the breasts from the oven to a cutting board and let them rest for three minutes.
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Pour off the duck fat. Discard or add to the previously saved liquid. (Transfer to a glass jar and refrigerate or freeze for future use.)
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Transfer the caramelized onions to a platter.
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Cut the duck breasts into slices or leave them whole.
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Arrange the duck over the pearl onions.
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Pour the remaining sauce from the pan over the top and serve.